After consideration and search online, i have find that the prove of wrong of this deduction is following:
Assume a set of elements {1,2,3}
Relation R can be apply on this set so that we have
R = {(1,2), (1,3), (2,1), (3,1), (2,3), (3,2)}
The relation (1,2) and (2,1) satisfy symmetry, (1,2), (2,3), (3,1) satisfy transit etc.
So the main point is that all the element in the set is satisfied with symmetry and transit. But (1,1), (2,2), (3,3) is not defined in the set so it is not existed ever in the set. So even if we say that relation R is symmetry transit, but it is not necessarily reflexive.
But my confusion is that since R has symmetry and transit property, can we say that (1,1), (2,2), (3,3) is the hidden element in relation R? Its like before Faraday, we just know electricity and magnetivity and they are independent. But actually the hidden property is that electricity and magnetic can be generated by each other, it just has not been recognised among our physical system yet. Or take another example is that for primitive man, they only know egg is egg, and fire drop down by thunder. However actually egg + fire we can make sunrise eggs. So after induction can we say that reflexivity is actually existing in this system?